List of publications:

• pH-dependent allosteric remodeling of a bacterial riboswitch couples alkaline activation to metal sensing, Danea Palmer, Adrien Chauvier, Tomás F. D. Silva, Avery Ontiveros, Giovanni Bussi, Nils G. Walter, Tatiana V. Mishanina, bioRxiv, doi:10.64898/2026.02.18.706685
• Combined All-Atom Simulations and Biophysical Assays Uncover Loop-Driven Stabilization in the HRAS i-motif, Alhadji Malloum, Valentina Arciuolo, Pavlína Pokorná, Luca Grisanti, Bruno Pagano, Jussara Amato, Alessandra Magistrato, J. Chem. Inf. Model., in press (2026)
• Monovalent ions aid catalysis of two-metal-ion dependent RNA editors, Jure Borišek, Jana Aupič, Alessandra Magistrato, Coord. Chem. Rev. 557, 217754 (2026)
• Blind Prediction of Complex Water and Ion Ensembles Around RNA in CASP16, Rachael Kretsch et al, Proteins 94, 381 (2026) (preprint)
• Ensemble Refinement of mismodeled cryo-EM RNA Structures Using All-Atom Simulations, Elisa Posani, Pavel Janoš, Daniel Haack, Navtej Toor, Massimiliano Bonomi, Alessandra Magistrato, Giovanni Bussi, Nat. Commun. 16, 4549 (2025) (preprint)
• PLUMED Tutorials: a collaborative, community-driven learning ecosystem, Gareth Tribello et al, J. Chem. Phys. 162, 092501 (2025) (preprint)