2025-01-16
Our research presented at Freie Universität Berlin ! Giovanni Bussi will give a CRC colloquium presenting our recent applications of integrative methods and enhanced sampling to #RNA dynamics. Host: Cecilia Clementi www.mi.fu-berlin.de/en/sfb1114/e...
(view post)2025-01-15
📢 Post-doc opportunity alert! Join the Molecular and Statistical Biophysics group at SISSA. Choose your mentor from Giovanni Bussi, Cristian Micheletti, or Angelo Rosa, or collaborate across these groups. www.bussilab.org/joinus#postd... #joinus Please reshare!
(view post)2025-01-13
Our research presented at kitkarlsruhe.bsky.social Institute of Physical Chemistry! Today Giovanni Bussi will discuss #RNA, integrative methods, enhanced sampling, and recent PLUMED initiatives www.ipc.kit.edu/english/19_3.... Host Tomas Kubar
(view post)2024-12-19
Our work presented at the 3D-BIOINFO-PT workshop 3d-bioinfo-pt.github.io/workshops/wo... and meeting 3d-bioinfo-pt.github.io/annual_meeti...! Tomas Silva will give a PLUMED tutorial on constant pH #metadynamics and show our latest results on #RNA oligomers (arxiv.org/abs/2410.16064)
(view post)2024-12-18
📢 Presentations from #CASP16 are public. Assessment of the RNA-solvation target by Rachael Kretsch is confirmed: our two submissions ranked 1st and 2nd in CC with #cryo-EM 🥳 Congrats to Olivier Languin-Cattoën, Elisa Posani, Giovanni Bussi www.predictioncenter.org/casp16/doc/p...
(view post)2024-12-18
SISSA SBP alumni workshop is starting today! sites.google.com/view/sbpalum... Many talks from previous members of our group: Francesco Di Palma, Andrea Pérez-Villa, Andrea Cesari, Francesca Cuturello, Nicola Calonaci, and Thorben Froehlking 🎉 🎄⛄
(view post)2024-12-16
The Hitchhiker's Guide to the Conformational Space of #DNA G-#quadruplexes is out on J. Comput. Chem. 🥳 ! Work done in Pavel Banáš group, we contributed to define the enhanced sampling strategy. Read more: doi.org/10.1002/jcc....
(view post)2024-12-16
Our work presented at the XBW2024 workshop people.sissa.it/~michelet/XB...! Salvatore Di Marco will show our results on #RNA - #membrane interactions (see doi.org/10.1101/2024...), and Giovanni Bussi will show our recent #CASP16 experience with RNA and Mg2+
(view post)2024-12-06
📢 New #preprint describing our community effort to share #plumed tutorials arxiv.org/abs/2412.03595 ! Explore the tutorials at www.plumed-tutorials.org
(view post)2024-12-04
Our research presented at the #CASP16 meeting www.predictioncenter.org/casp16! Giovanni Bussi will give a talk showing the results obtained with Olivier Languin-Cattoën and Elisa Posani on the #RNA solvation target.
(view post)2024-12-02
Our research presented at the CECAM workshop www.cecam.org/workshop-det...! Ivan Gilardoni will show a poster about our #python package MDrefine. See also arxiv.org/abs/2411.07798
(view post)2024-11-25
New #openreview from our group at disq.us/p/3145xzw! Giovanni Bussi and Ivan Gilardoni reviewed a #preprint by Paul Robustelli on the determination of conformational ensembles for intrinsically disordered proteins, combining molecular dynamics simulations and experimental data. Also posted at prereview.org/reviews/142...
(view post)2024-11-20
Our first #openreview has been published! disq.us/t/4r5064p Olivier Languin-Cattoën and Giovanni Bussi reviewed a #preprint by Guillaume Stirnemann and Glen Hocky on catch bonding behavior in vinculin-actin unbinding kinetics. Also posted at prereview.org/reviews/142...
(view post)2024-11-16
This summer we used #moleculardynamics simulations and #enhancedsampling to predict the solvation shell of a ribozyme! Results will be announced at the coming #CASP16 conference, to which we will attend to present our approach. Finger crossed 🤞 x.com/BiologyAIDaily/stat...
(view post)2024-11-14
🚀Introducing MDRefine: our new #python package for integrating experimental data with #moleculardynamics trajectories through diverse reweighting methods! Check out the #preprint: arxiv.org/abs/2411.07798. Summary in thread 🧵:
(view post)2024-11-12
🚀Excited to share our #preprint on implementing constant pH metadynamics for #RNA oligomers! Check it out here: arxiv.org/abs/2410.16064. Thread 🧵:
(view post)2024-11-09
📢 Our work on #m6A role in #RNA recognition has been published on @JPhysChem B! doi.org/10.1021/acs.jpcb.... An effort led by @Piompons with help from Miroslav Krepl, @sponer_lab , and @BussiGio Summary at x.com/bussilab/status/178...
(view post)2024-04-24
Excited to share our new #preprint on #m6A's role in #RNA recognition! 🧬 A collaborative effort by @piompons, Miroslav Krepl, @sponer_lab, & @BussiGio. Dive into our findings in this thread 👇
(view post)2024-02-06
And today, Giuseppe Sacco will show how we are analyzing #SHAPE datasets from @DrJ_RNA to build a physical model for the interaction of #RNA molecules with chemical probes. Physics of Biomolecules in Bressanone
(view post)2024-02-05
And Ivan Gilardoni will later discuss our recent work on the combination of force field and ensemble refinement, just published in @JPhysChem pubs.acs.org/doi/10.1021/.... Physics of Biomolecules in Bressanone
(view post)2024-02-05
Our work presented at this amazing workshop in Bressanone! @BussiGio will show today how we combine #MD, denaturation experiments, and #cryoEM data to refine #RNA force fields and ensembles!
(view post)2024-01-26
Our #paper on the combination of force-field and ensembles refinement has been published on @JPhysChem Letters 🥳!! doi.org/10.1021/acs.jpcle... Congratulations Ivan Gilardoni, @TFroehlking, @BussiGio. Summary: x.com/bussilab/status/172...
(view post)2023-11-23
Checkout the #preprint of our latest manuscript on ensemble refinement combined with force-field fitting! arxiv.org/abs/2311.13532 by Ivan Gilardoni,@TFroehlking and @BussiGio. Summary in thread:
(view post)2023-10-26
Congratulations to @Piompons for successfully defending his PhD today @SbpSissa @Sissaschool!! 🍾🍾🍾And many thanks to external examiners Martin Zacharias and Modesto @orozco_lab!
(view post)